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Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9.

Neupane S, Högberg N, Alström S, Lucas S, Han J, Lapidus A, Cheng JF, Bruce D, Goodwin L, Pitluck S, Peters L, Ovchinnikova G, Lu M, Han C, Detter JC, Tapia R, Fiebig A, Land M, Hauser L, Kyrpides NC, Ivanova N, Pagani I, Klenk HP, Woyke T, Finlay RD - Stand Genomic Sci (2012)

Bottom Line: Serratia plymuthica are plant-associated, plant beneficial species belonging to the family Enterobacteriaceae.S. plymuthica AS9 is of special interest for its ability to inhibit fungal pathogens of rapeseed and to promote plant growth.The genome of S. plymuthica AS9 comprises a 5,442,880 bp long circular chromosome that consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons.

View Article: PubMed Central - PubMed

ABSTRACT
Serratia plymuthica are plant-associated, plant beneficial species belonging to the family Enterobacteriaceae. The members of the genus Serratia are ubiquitous in nature and their life style varies from endophytic to free-living. S. plymuthica AS9 is of special interest for its ability to inhibit fungal pathogens of rapeseed and to promote plant growth. The genome of S. plymuthica AS9 comprises a 5,442,880 bp long circular chromosome that consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome is part of the project entitled "Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens" awarded through the 2010 DOE-JGI Community Sequencing Program (CSP2010).

No MeSH data available.


Graphical circular map of the chromosome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
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f3: Graphical circular map of the chromosome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.

Mentions: The S. plymuthica AS9 genome includes a single circular chromosome of 5,442,880 bp with 55.96% GC content. The genome had 5,139 predicted genes of which 4,952 were assigned as protein-coding genes, 113 RNA genes and 75 pseudogenes [Figure 3]. The majority of protein coding genes (87.42%) was assigned as a putative function while those remaining were annotated as hypothetical proteins [Table 3]. The distribution into COG functional categories is presented in Table 4.


Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9.

Neupane S, Högberg N, Alström S, Lucas S, Han J, Lapidus A, Cheng JF, Bruce D, Goodwin L, Pitluck S, Peters L, Ovchinnikova G, Lu M, Han C, Detter JC, Tapia R, Fiebig A, Land M, Hauser L, Kyrpides NC, Ivanova N, Pagani I, Klenk HP, Woyke T, Finlay RD - Stand Genomic Sci (2012)

Graphical circular map of the chromosome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
© Copyright Policy
Related In: Results  -  Collection

Show All Figures
getmorefigures.php?uid=PMC3368398&req=5

f3: Graphical circular map of the chromosome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
Mentions: The S. plymuthica AS9 genome includes a single circular chromosome of 5,442,880 bp with 55.96% GC content. The genome had 5,139 predicted genes of which 4,952 were assigned as protein-coding genes, 113 RNA genes and 75 pseudogenes [Figure 3]. The majority of protein coding genes (87.42%) was assigned as a putative function while those remaining were annotated as hypothetical proteins [Table 3]. The distribution into COG functional categories is presented in Table 4.

Bottom Line: Serratia plymuthica are plant-associated, plant beneficial species belonging to the family Enterobacteriaceae.S. plymuthica AS9 is of special interest for its ability to inhibit fungal pathogens of rapeseed and to promote plant growth.The genome of S. plymuthica AS9 comprises a 5,442,880 bp long circular chromosome that consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons.

View Article: PubMed Central - PubMed

ABSTRACT
Serratia plymuthica are plant-associated, plant beneficial species belonging to the family Enterobacteriaceae. The members of the genus Serratia are ubiquitous in nature and their life style varies from endophytic to free-living. S. plymuthica AS9 is of special interest for its ability to inhibit fungal pathogens of rapeseed and to promote plant growth. The genome of S. plymuthica AS9 comprises a 5,442,880 bp long circular chromosome that consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome is part of the project entitled "Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens" awarded through the 2010 DOE-JGI Community Sequencing Program (CSP2010).

No MeSH data available.