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The state of standards in genomic sciences.

Garrity GM - Stand Genomic Sci (2011)

View Article: PubMed Central - PubMed

Affiliation: Department of Microbiology and Molecular Genetics, Michigan State University.

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On July 20, 2009, we began the public phase of an experiment in open access publishing with the first issue of Standards in Genomic Sciences (SIGS)... The rational for the journal was to fulfill a perceived need in the community for the continued publication of “genome papers”, the once familiar companion articles that accompanied the public release of genome sequencing projects... Similarly, reviewers could easily process manuscripts and spot discrepancies that might otherwise go unnoticed... The format has proven to be quite successful and in February 2011, the 100 Short Genome Report was published in SIGS... A breakdown of the articles published in SIGS, by type, is presented in Table 2... Other notable events in 2011 include a special issue dedicated to meeting reports and community dialog articles by various standards groups (Vol 5 No 2) and the first effective publication of a taxonomic proposal for a new bacterial species published in SIGS... All of the SIGS content has been deposited in the PMC archive and is available in HTML, PDF and XML form... Listing in PMC has resulted in an increase in our readership, with approximately one third of our readers accessing content from the PMC site... At the end of 2011, we were experiencing 230 downloads of articles/day on the SIGS site and 121 downloads/day on the PMC site... Although SIGS has not been publishing long enough to estimate our impact factor, 93 articles have been cited a total of 271 times in articles included in the Cite-by-Linking program of Cross-Ref... Our experience with the template for Short Genome Reports has been largely successful... However, like other open access publications we need to institute a cost recovery mechanism to sustain publication of SIGS... More information about the publication fees is included in the Instructions to Authors.

No MeSH data available.


Top ten journals in which genome publications have appeared. To date approximately 1,518 articles have appeared in over 60 peer-reviewed publications. Source - Genomes Online Database and Standards in Genomic Sciences.
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f1: Top ten journals in which genome publications have appeared. To date approximately 1,518 articles have appeared in over 60 peer-reviewed publications. Source - Genomes Online Database and Standards in Genomic Sciences.

Mentions: Nonetheless, the total number of genome articles remains relatively low (approximately 1,550) compared to the number of genome sequencing projects that either have been completed or are currently underway (11,221; GOLD). Coverage in the scientific literature tends to be somewhat sporadic and unpredictable, with reports appearing in more than 60 peer reviewed journals. However, more than 90% of genome reports have appeared in only ten journals (Figure 1). As of December 31, 2011, SIGS ranked third among the top ten periodicals publishing genome reports and will likely move into the second position during the first quarter of 2012. A breakdown of the articles published in SIGS, by type, is presented in Table 2.


The state of standards in genomic sciences.

Garrity GM - Stand Genomic Sci (2011)

Top ten journals in which genome publications have appeared. To date approximately 1,518 articles have appeared in over 60 peer-reviewed publications. Source - Genomes Online Database and Standards in Genomic Sciences.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3368243&req=5

f1: Top ten journals in which genome publications have appeared. To date approximately 1,518 articles have appeared in over 60 peer-reviewed publications. Source - Genomes Online Database and Standards in Genomic Sciences.
Mentions: Nonetheless, the total number of genome articles remains relatively low (approximately 1,550) compared to the number of genome sequencing projects that either have been completed or are currently underway (11,221; GOLD). Coverage in the scientific literature tends to be somewhat sporadic and unpredictable, with reports appearing in more than 60 peer reviewed journals. However, more than 90% of genome reports have appeared in only ten journals (Figure 1). As of December 31, 2011, SIGS ranked third among the top ten periodicals publishing genome reports and will likely move into the second position during the first quarter of 2012. A breakdown of the articles published in SIGS, by type, is presented in Table 2.

View Article: PubMed Central - PubMed

Affiliation: Department of Microbiology and Molecular Genetics, Michigan State University.

AUTOMATICALLY GENERATED EXCERPT
Please rate it.

On July 20, 2009, we began the public phase of an experiment in open access publishing with the first issue of Standards in Genomic Sciences (SIGS)... The rational for the journal was to fulfill a perceived need in the community for the continued publication of “genome papers”, the once familiar companion articles that accompanied the public release of genome sequencing projects... Similarly, reviewers could easily process manuscripts and spot discrepancies that might otherwise go unnoticed... The format has proven to be quite successful and in February 2011, the 100 Short Genome Report was published in SIGS... A breakdown of the articles published in SIGS, by type, is presented in Table 2... Other notable events in 2011 include a special issue dedicated to meeting reports and community dialog articles by various standards groups (Vol 5 No 2) and the first effective publication of a taxonomic proposal for a new bacterial species published in SIGS... All of the SIGS content has been deposited in the PMC archive and is available in HTML, PDF and XML form... Listing in PMC has resulted in an increase in our readership, with approximately one third of our readers accessing content from the PMC site... At the end of 2011, we were experiencing 230 downloads of articles/day on the SIGS site and 121 downloads/day on the PMC site... Although SIGS has not been publishing long enough to estimate our impact factor, 93 articles have been cited a total of 271 times in articles included in the Cite-by-Linking program of Cross-Ref... Our experience with the template for Short Genome Reports has been largely successful... However, like other open access publications we need to institute a cost recovery mechanism to sustain publication of SIGS... More information about the publication fees is included in the Instructions to Authors.

No MeSH data available.