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Complete genome sequence of Allochromatium vinosum DSM 180(T).

Weissgerber T, Zigann R, Bruce D, Chang YJ, Detter JC, Han C, Hauser L, Jeffries CD, Land M, Munk AC, Tapia R, Dahl C - Stand Genomic Sci (2011)

Bottom Line: All members were isolated from freshwater, brackish water or marine habitats and are predominately obligate phototrophs.Here we describe the features of the organism, together with the complete genome sequence and annotation.The 3,669,074 bp genome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Genome Institute Community Sequencing Program.

View Article: PubMed Central - PubMed

ABSTRACT
Allochromatium vinosum formerly Chromatium vinosum is a mesophilic purple sulfur bacterium belonging to the family Chromatiaceae in the bacterial class Gammaproteobacteria. The genus Allochromatium contains currently five species. All members were isolated from freshwater, brackish water or marine habitats and are predominately obligate phototrophs. Here we describe the features of the organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the Chromatiaceae within the purple sulfur bacteria thriving in globally occurring habitats. The 3,669,074 bp genome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Genome Institute Community Sequencing Program.

No MeSH data available.


Graphical circular map of the chromosome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
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f3: Graphical circular map of the chromosome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.

Mentions: The 3,669,074 bp genome consists of a 3,526,903 bp chromosome and two plasmids of 102,242 bp and 39,929 bp, respectively. The genome exhibits an overall G + C content of 64.19% (Table 3, Figure 3, and Figure 4). Of the 3,366 genes predicted, 3,302 are protein-coding genes and 64 RNAs; 82 pseudogenes were also identified. The majority of the protein-coding genes (73.26%) were assigned a putative function while the remaining ones were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 4.


Complete genome sequence of Allochromatium vinosum DSM 180(T).

Weissgerber T, Zigann R, Bruce D, Chang YJ, Detter JC, Han C, Hauser L, Jeffries CD, Land M, Munk AC, Tapia R, Dahl C - Stand Genomic Sci (2011)

Graphical circular map of the chromosome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3368242&req=5

f3: Graphical circular map of the chromosome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
Mentions: The 3,669,074 bp genome consists of a 3,526,903 bp chromosome and two plasmids of 102,242 bp and 39,929 bp, respectively. The genome exhibits an overall G + C content of 64.19% (Table 3, Figure 3, and Figure 4). Of the 3,366 genes predicted, 3,302 are protein-coding genes and 64 RNAs; 82 pseudogenes were also identified. The majority of the protein-coding genes (73.26%) were assigned a putative function while the remaining ones were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 4.

Bottom Line: All members were isolated from freshwater, brackish water or marine habitats and are predominately obligate phototrophs.Here we describe the features of the organism, together with the complete genome sequence and annotation.The 3,669,074 bp genome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Genome Institute Community Sequencing Program.

View Article: PubMed Central - PubMed

ABSTRACT
Allochromatium vinosum formerly Chromatium vinosum is a mesophilic purple sulfur bacterium belonging to the family Chromatiaceae in the bacterial class Gammaproteobacteria. The genus Allochromatium contains currently five species. All members were isolated from freshwater, brackish water or marine habitats and are predominately obligate phototrophs. Here we describe the features of the organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the Chromatiaceae within the purple sulfur bacteria thriving in globally occurring habitats. The 3,669,074 bp genome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Genome Institute Community Sequencing Program.

No MeSH data available.