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Complete genome sequence of Allochromatium vinosum DSM 180(T).

Weissgerber T, Zigann R, Bruce D, Chang YJ, Detter JC, Han C, Hauser L, Jeffries CD, Land M, Munk AC, Tapia R, Dahl C - Stand Genomic Sci (2011)

Bottom Line: All members were isolated from freshwater, brackish water or marine habitats and are predominately obligate phototrophs.Here we describe the features of the organism, together with the complete genome sequence and annotation.The 3,669,074 bp genome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Genome Institute Community Sequencing Program.

View Article: PubMed Central - PubMed

ABSTRACT
Allochromatium vinosum formerly Chromatium vinosum is a mesophilic purple sulfur bacterium belonging to the family Chromatiaceae in the bacterial class Gammaproteobacteria. The genus Allochromatium contains currently five species. All members were isolated from freshwater, brackish water or marine habitats and are predominately obligate phototrophs. Here we describe the features of the organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the Chromatiaceae within the purple sulfur bacteria thriving in globally occurring habitats. The 3,669,074 bp genome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Genome Institute Community Sequencing Program.

No MeSH data available.


Phylogenetic tree highlighting the position of A. vinosum DSM 180T relative to several other type strains within the Chromatiaceae and Ectothiorhodospiraceae based on 16S rRNA sequence analysis. The tree was built with the RDP Tree Builder and numbers above branches are support values from 100 bootstrap replicates [25]. Bar, 1 nucleotide substitutions per 100 nucleotides.
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f1: Phylogenetic tree highlighting the position of A. vinosum DSM 180T relative to several other type strains within the Chromatiaceae and Ectothiorhodospiraceae based on 16S rRNA sequence analysis. The tree was built with the RDP Tree Builder and numbers above branches are support values from 100 bootstrap replicates [25]. Bar, 1 nucleotide substitutions per 100 nucleotides.

Mentions: There are five described species currently belonging to the genus Allochromatium [10, Table 1] namely A. vinosum, A. minutissimum,A. warmingii, A. phaeobacterium and A. renukae. Figure 1 shows the phylogenetic neighborhood of A. vinosum DSM 180T in a 16S rRNA based maximum likelihood phylogenetic tree. Based on 16S rRNA gene sequences the closest related type strain is A. minutissimum DSM 1376T with 98.4% sequence identity, while the other type strains of the genus Allochromatium share 93.8-97% sequence identity.


Complete genome sequence of Allochromatium vinosum DSM 180(T).

Weissgerber T, Zigann R, Bruce D, Chang YJ, Detter JC, Han C, Hauser L, Jeffries CD, Land M, Munk AC, Tapia R, Dahl C - Stand Genomic Sci (2011)

Phylogenetic tree highlighting the position of A. vinosum DSM 180T relative to several other type strains within the Chromatiaceae and Ectothiorhodospiraceae based on 16S rRNA sequence analysis. The tree was built with the RDP Tree Builder and numbers above branches are support values from 100 bootstrap replicates [25]. Bar, 1 nucleotide substitutions per 100 nucleotides.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3368242&req=5

f1: Phylogenetic tree highlighting the position of A. vinosum DSM 180T relative to several other type strains within the Chromatiaceae and Ectothiorhodospiraceae based on 16S rRNA sequence analysis. The tree was built with the RDP Tree Builder and numbers above branches are support values from 100 bootstrap replicates [25]. Bar, 1 nucleotide substitutions per 100 nucleotides.
Mentions: There are five described species currently belonging to the genus Allochromatium [10, Table 1] namely A. vinosum, A. minutissimum,A. warmingii, A. phaeobacterium and A. renukae. Figure 1 shows the phylogenetic neighborhood of A. vinosum DSM 180T in a 16S rRNA based maximum likelihood phylogenetic tree. Based on 16S rRNA gene sequences the closest related type strain is A. minutissimum DSM 1376T with 98.4% sequence identity, while the other type strains of the genus Allochromatium share 93.8-97% sequence identity.

Bottom Line: All members were isolated from freshwater, brackish water or marine habitats and are predominately obligate phototrophs.Here we describe the features of the organism, together with the complete genome sequence and annotation.The 3,669,074 bp genome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Genome Institute Community Sequencing Program.

View Article: PubMed Central - PubMed

ABSTRACT
Allochromatium vinosum formerly Chromatium vinosum is a mesophilic purple sulfur bacterium belonging to the family Chromatiaceae in the bacterial class Gammaproteobacteria. The genus Allochromatium contains currently five species. All members were isolated from freshwater, brackish water or marine habitats and are predominately obligate phototrophs. Here we describe the features of the organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the Chromatiaceae within the purple sulfur bacteria thriving in globally occurring habitats. The 3,669,074 bp genome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Genome Institute Community Sequencing Program.

No MeSH data available.