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Klassevirus infection in children, South Korea.

Han TH, Kim CH, Chung JY, Park SH, Hwang ES - Emerging Infect. Dis. (2010)

Bottom Line: South Korea, we performed molecular screening in fecal and nasopharyngeal samples from hospitalized children with gastroenteritis.A total of 26 (8.8%) of 294 fecal samples were positive for klassevirus.Klassevirus may be a possible cause of gastroenteritis.

View Article: PubMed Central - PubMed

Affiliation: Inje University College of Medicine, Seoul, South Korea.

ABSTRACT
South Korea, we performed molecular screening in fecal and nasopharyngeal samples from hospitalized children with gastroenteritis. A total of 26 (8.8%) of 294 fecal samples were positive for klassevirus. Klassevirus may be a possible cause of gastroenteritis.

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Related in: MedlinePlus

Phylogenetic analysis of the A) partial viral protein (VP) 0/VP1 (852 bp), B) 3D (668 bp), and C) 2C (345 bp) gene sequences of klassevirus-1 strains. The klassevirus-1 strains isolated in this study are indicated in boldface. The tree was constructed by using the neighbor-joining method with Kimura 2-parameter estimation. The bootstrap values from 1,000 replicates are present on each branch. The nucleotide sequences identified in this study have been deposited in GenBank under accession nos. HM38122–HM038147 (3D gene), HM038148–HM038170 (VP0/VP1 gene), and HM038171–HM038196 (2C gene). AU, Australia; KR, Korea; SP, Spain; US, United States.
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FA.1: Phylogenetic analysis of the A) partial viral protein (VP) 0/VP1 (852 bp), B) 3D (668 bp), and C) 2C (345 bp) gene sequences of klassevirus-1 strains. The klassevirus-1 strains isolated in this study are indicated in boldface. The tree was constructed by using the neighbor-joining method with Kimura 2-parameter estimation. The bootstrap values from 1,000 replicates are present on each branch. The nucleotide sequences identified in this study have been deposited in GenBank under accession nos. HM38122–HM038147 (3D gene), HM038148–HM038170 (VP0/VP1 gene), and HM038171–HM038196 (2C gene). AU, Australia; KR, Korea; SP, Spain; US, United States.

Mentions: Phylogenetic analysis showed that Korean isolates in this study clustered into reference strains, KV US/2002 (NC 012986) and KV AU/1984 (GQ 253930) (Figure A1), but the sequence variation was limited. The ranges of nucleotide differences and amino acid differences between Korean strains and reference strains were 5%–11% (Figure A1) and 0%–14% (data not shown), respectively.


Klassevirus infection in children, South Korea.

Han TH, Kim CH, Chung JY, Park SH, Hwang ES - Emerging Infect. Dis. (2010)

Phylogenetic analysis of the A) partial viral protein (VP) 0/VP1 (852 bp), B) 3D (668 bp), and C) 2C (345 bp) gene sequences of klassevirus-1 strains. The klassevirus-1 strains isolated in this study are indicated in boldface. The tree was constructed by using the neighbor-joining method with Kimura 2-parameter estimation. The bootstrap values from 1,000 replicates are present on each branch. The nucleotide sequences identified in this study have been deposited in GenBank under accession nos. HM38122–HM038147 (3D gene), HM038148–HM038170 (VP0/VP1 gene), and HM038171–HM038196 (2C gene). AU, Australia; KR, Korea; SP, Spain; US, United States.
© Copyright Policy
Related In: Results  -  Collection

Show All Figures
getmorefigures.php?uid=PMC3295000&req=5

FA.1: Phylogenetic analysis of the A) partial viral protein (VP) 0/VP1 (852 bp), B) 3D (668 bp), and C) 2C (345 bp) gene sequences of klassevirus-1 strains. The klassevirus-1 strains isolated in this study are indicated in boldface. The tree was constructed by using the neighbor-joining method with Kimura 2-parameter estimation. The bootstrap values from 1,000 replicates are present on each branch. The nucleotide sequences identified in this study have been deposited in GenBank under accession nos. HM38122–HM038147 (3D gene), HM038148–HM038170 (VP0/VP1 gene), and HM038171–HM038196 (2C gene). AU, Australia; KR, Korea; SP, Spain; US, United States.
Mentions: Phylogenetic analysis showed that Korean isolates in this study clustered into reference strains, KV US/2002 (NC 012986) and KV AU/1984 (GQ 253930) (Figure A1), but the sequence variation was limited. The ranges of nucleotide differences and amino acid differences between Korean strains and reference strains were 5%–11% (Figure A1) and 0%–14% (data not shown), respectively.

Bottom Line: South Korea, we performed molecular screening in fecal and nasopharyngeal samples from hospitalized children with gastroenteritis.A total of 26 (8.8%) of 294 fecal samples were positive for klassevirus.Klassevirus may be a possible cause of gastroenteritis.

View Article: PubMed Central - PubMed

Affiliation: Inje University College of Medicine, Seoul, South Korea.

ABSTRACT
South Korea, we performed molecular screening in fecal and nasopharyngeal samples from hospitalized children with gastroenteritis. A total of 26 (8.8%) of 294 fecal samples were positive for klassevirus. Klassevirus may be a possible cause of gastroenteritis.

Show MeSH
Related in: MedlinePlus