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FAIR: A server for internal sequence repeats.

Senthilkumar R, Sabarinathan R, Hameed BS, Banerjee N, Chidambarathanu N, Karthik R, Sekar K - Bioinformation (2010)

Bottom Line: An Internet computing server has been developed to identify all the occurrences of the internal sequence repeats in a protein and DNA sequences.Further, an option is provided for the users to check the occurrence(s) of the resultant sequence repeats in the other sequence and structure (Protein Data Bank) databases.The databases deployed in the proposed computing engine are up-to-date and thus the users will get the latest information available in the respective databases.

View Article: PubMed Central - PubMed

Affiliation: Bioinformatics Centre, Centre of Excellence in Structural Biology and Bio-computing, Indian Institute of Science, Bangalore 560 012, India.

ABSTRACT

Unlabelled: An Internet computing server has been developed to identify all the occurrences of the internal sequence repeats in a protein and DNA sequences. Further, an option is provided for the users to check the occurrence(s) of the resultant sequence repeats in the other sequence and structure (Protein Data Bank) databases. The databases deployed in the proposed computing engine are up-to-date and thus the users will get the latest information available in the respective databases. The server is freely accessible over the World Wide Web (WWW).

Availability: http://bioserver1.physics.iisc.ernet.in/fair/

No MeSH data available.


Related in: MedlinePlus

Different lengths of identical repeats identified in the complete genome of Mycobacterium tuberculosis H37Rv.
© Copyright Policy - open-access
Related In: Results  -  Collection


getmorefigures.php?uid=PMC2957760&req=5

Figure 2: Different lengths of identical repeats identified in the complete genome of Mycobacterium tuberculosis H37Rv.

Mentions: The complete genome of Mycobacterium tuberculosis H37Rv hasbeen given as the input. The total number of nucleotides in the inputsequence is 4411532 (here again, only part of the input sequence isshown in Figure 2). For a minimum number of nucleotides in therepeat as 50, the sample output has been displayed in Figure 2. Thesesignificant large identical repeats would enable scientists to focus onsequence to structure correlation and their implications.


FAIR: A server for internal sequence repeats.

Senthilkumar R, Sabarinathan R, Hameed BS, Banerjee N, Chidambarathanu N, Karthik R, Sekar K - Bioinformation (2010)

Different lengths of identical repeats identified in the complete genome of Mycobacterium tuberculosis H37Rv.
© Copyright Policy - open-access
Related In: Results  -  Collection

Show All Figures
getmorefigures.php?uid=PMC2957760&req=5

Figure 2: Different lengths of identical repeats identified in the complete genome of Mycobacterium tuberculosis H37Rv.
Mentions: The complete genome of Mycobacterium tuberculosis H37Rv hasbeen given as the input. The total number of nucleotides in the inputsequence is 4411532 (here again, only part of the input sequence isshown in Figure 2). For a minimum number of nucleotides in therepeat as 50, the sample output has been displayed in Figure 2. Thesesignificant large identical repeats would enable scientists to focus onsequence to structure correlation and their implications.

Bottom Line: An Internet computing server has been developed to identify all the occurrences of the internal sequence repeats in a protein and DNA sequences.Further, an option is provided for the users to check the occurrence(s) of the resultant sequence repeats in the other sequence and structure (Protein Data Bank) databases.The databases deployed in the proposed computing engine are up-to-date and thus the users will get the latest information available in the respective databases.

View Article: PubMed Central - PubMed

Affiliation: Bioinformatics Centre, Centre of Excellence in Structural Biology and Bio-computing, Indian Institute of Science, Bangalore 560 012, India.

ABSTRACT

Unlabelled: An Internet computing server has been developed to identify all the occurrences of the internal sequence repeats in a protein and DNA sequences. Further, an option is provided for the users to check the occurrence(s) of the resultant sequence repeats in the other sequence and structure (Protein Data Bank) databases. The databases deployed in the proposed computing engine are up-to-date and thus the users will get the latest information available in the respective databases. The server is freely accessible over the World Wide Web (WWW).

Availability: http://bioserver1.physics.iisc.ernet.in/fair/

No MeSH data available.


Related in: MedlinePlus